Detailed information of SNP:
|
SNP ID:
sf1216189335(Gbrowse)
Chromosome: chr12 Position: 16189335 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 69.42% | 30.58% |
| All Indica | 790 | 94.81% | 5.19% |
| All Japonica | 492 | 29.07% | 70.93% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 334 | 10.48% | 89.52% |
| Tropical Japonica | 91 | 91.21% | 8.79% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216189335 | G->A | LOC_Os12g27510(LOC_Os12g27510.1) | Non-Synonymous SNP |