Detailed information of SNP:
|
SNP ID:
sf1216189736(Gbrowse)
Chromosome: chr12 Position: 16189736 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 67.21% | 32.79% |
| All Indica | 797 | 95.36% | 4.64% |
| All Japonica | 497 | 21.93% | 78.07% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 374 | 98.66% | 1.34% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 88.10% | 11.90% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216189736 | G->A | LOC_Os12g27510(LOC_Os12g27510.1) | INTRON |