Detailed information of SNP:
|
SNP ID:
sf1216190159(Gbrowse)
Chromosome: chr12 Position: 16190159 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 67.21% | 32.79% |
| All Indica | 796 | 95.48% | 4.52% |
| All Japonica | 497 | 21.93% | 78.07% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 99.20% | 0.80% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216190159 | C->A | LOC_Os12g27510(LOC_Os12g27510.1) | Non-Synonymous SNP |