Detailed information of SNP:
|
SNP ID:
sf1216196222(Gbrowse)
Chromosome: chr12 Position: 16196222 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 99.00% | 1.00% |
| All Indica | 791 | 100.00% | 0.00% |
| All Japonica | 487 | 97.13% | 2.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 87 | 87.36% | 12.64% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216196222 | C->A | LOC_Os12g27520(LOC_Os12g27520.1) | INTRON |
| sf1216196222 | C->A | LOC_Os12g27520(LOC_Os12g27520.4) | INTRON |
| sf1216196222 | C->A | LOC_Os12g27520(LOC_Os12g27520.3) | INTRON |