Detailed information of SNP:
|
SNP ID:
sf1216209451(Gbrowse)
Chromosome: chr12 Position: 16209451 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 68.69% | 31.31% |
| All Indica | 789 | 58.94% | 41.06% |
| All Japonica | 492 | 88.82% | 11.18% |
| Aus | 65 | 27.69% | 72.31% |
| Indica I | 371 | 74.12% | 25.88% |
| Indica II | 209 | 28.71% | 71.29% |
| Indica Intermediate | 209 | 62.20% | 37.80% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 90 | 57.78% | 42.22% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216209451 | C->T | INTERGENIC | None |