Detailed information of SNP:



SNP ID: sf1216218855(Gbrowse)

Chromosome: chr12

Position: 16218855
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1405 98.43% 1.57%
All Indica785 97.71% 2.29%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I370 99.73% 0.27%
Indica II206 93.20% 6.80%
Indica Intermediate209 98.56% 1.44%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1216218855 C->T INTERGENIC None