Detailed information of SNP:
|
SNP ID:
sf1216234309(Gbrowse)
Chromosome: chr12 Position: 16234309 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 91.46% | 8.54% |
| All Indica | 799 | 95.37% | 4.63% |
| All Japonica | 495 | 89.09% | 10.91% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216234309 | A->G | LOC_Os12g27580(LOC_Os12g27580.1) | INTRON |