Detailed information of SNP:
|
SNP ID:
sf1216243396(Gbrowse)
Chromosome: chr12 Position: 16243396 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1352 | 91.64% | 8.36% |
| All Indica | 735 | 85.85% | 14.15% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 343 | 83.67% | 16.33% |
| Indica II | 201 | 84.58% | 15.42% |
| Indica Intermediate | 191 | 91.10% | 8.90% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216243396 | A->G | LOC_Os12g27600(LOC_Os12g27600.1) | Synonymous |