Detailed information of SNP:
|
SNP ID:
sf1216244470(Gbrowse)
Chromosome: chr12 Position: 16244470 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 97.24% | 2.76% |
| All Indica | 797 | 98.62% | 1.38% |
| All Japonica | 492 | 94.51% | 5.49% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 89 | 80.90% | 19.10% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216244470 | C->T | LOC_Os12g27600(LOC_Os12g27600.1) | Non-Synonymous SNP |