Detailed information of SNP:
|
SNP ID:
sf1216254394(Gbrowse)
Chromosome: chr12 Position: 16254394 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 60.88% | 39.12% |
| All Indica | 791 | 42.10% | 57.90% |
| All Japonica | 497 | 86.52% | 13.48% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 371 | 16.44% | 83.56% |
| Indica II | 211 | 81.99% | 18.01% |
| Indica Intermediate | 209 | 47.37% | 52.63% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216254394 | C->T | INTERGENIC | None |