Detailed information of SNP:
|
SNP ID:
sf1216256261(Gbrowse)
Chromosome: chr12 Position: 16256261 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 75.52% | 24.48% |
| All Indica | 773 | 70.89% | 29.11% |
| All Japonica | 494 | 87.25% | 12.75% |
| Aus | 66 | 39.39% | 60.61% |
| Indica I | 360 | 83.06% | 16.94% |
| Indica II | 209 | 53.59% | 46.41% |
| Indica Intermediate | 204 | 67.16% | 32.84% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 42.39% | 57.61% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216256261 | C->G | INTERGENIC | None |