Detailed information of SNP:
|
SNP ID:
sf1216258378(Gbrowse)
Chromosome: chr12 Position: 16258378 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 60.55% | 39.45% |
| All Indica | 799 | 89.49% | 10.51% |
| All Japonica | 497 | 21.33% | 78.67% |
| Aus | 65 | 23.08% | 76.92% |
| Indica I | 375 | 92.00% | 8.00% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216258378 | T->C | INTERGENIC | None |