Detailed information of SNP:
|
SNP ID:
sf1216258518(Gbrowse)
Chromosome: chr12 Position: 16258518 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 64.27% | 35.73% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 14.69% | 85.31% |
| Aus | 64 | 82.81% | 17.19% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216258518 | T->C | INTERGENIC | None |