Detailed information of SNP:
|
SNP ID:
sf1216258656(Gbrowse)
Chromosome: chr12 Position: 16258656 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 60.78% | 39.22% |
| All Indica | 797 | 32.87% | 67.13% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 374 | 29.41% | 70.59% |
| Indica II | 213 | 24.41% | 75.59% |
| Indica Intermediate | 210 | 47.62% | 52.38% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216258656 | G->A | INTERGENIC | None |