Detailed information of SNP:
|
SNP ID:
sf1216271049(Gbrowse)
Chromosome: chr12 Position: 16271049 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.57% | 5.43% |
| All Indica | 798 | 94.36% | 5.64% |
| All Japonica | 497 | 94.37% | 5.63% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216271049 | A->T | LOC_Os12g27640(LOC_Os12g27640.1) | INTRON |