Detailed information of SNP:
|
SNP ID:
sf1216271385(Gbrowse)
Chromosome: chr12 Position: 16271385 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 63.71% | 36.29% |
| All Indica | 798 | 90.48% | 9.52% |
| All Japonica | 497 | 22.13% | 77.87% |
| Aus | 61 | 68.85% | 31.15% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 77.46% | 22.54% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216271385 | G->T | LOC_Os12g27640(LOC_Os12g27640.1) | INTRON |