Detailed information of SNP:
|
SNP ID:
sf1216275534(Gbrowse)
Chromosome: chr12 Position: 16275534 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 60.72% | 39.28% |
| All Indica | 798 | 90.23% | 9.77% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216275534 | C->T | LOC_Os12g27650(LOC_Os12g27650.1) | INTRON |