Detailed information of SNP:
|
SNP ID:
sf1216275768(Gbrowse)
Chromosome: chr12 Position: 16275768 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 63.27% | 36.73% |
| All Indica | 794 | 41.81% | 58.19% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 370 | 30.54% | 69.46% |
| Indica II | 213 | 46.95% | 53.05% |
| Indica Intermediate | 211 | 56.40% | 43.60% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 70.21% | 29.79% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216275768 | C->T | LOC_Os12g27650(LOC_Os12g27650.1) | INTRON |