Detailed information of SNP:
|
SNP ID:
sf1216276249(Gbrowse)
Chromosome: chr12 Position: 16276249 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1261 | 55.99% | 44.01% |
| All Indica | 691 | 88.57% | 11.43% |
| All Japonica | 458 | 8.95% | 91.05% |
| Aus | 59 | 52.54% | 47.46% |
| Indica I | 307 | 90.23% | 9.77% |
| Indica II | 195 | 92.31% | 7.69% |
| Indica Intermediate | 189 | 82.01% | 17.99% |
| Temperate Japonica | 333 | 1.50% | 98.50% |
| Tropical Japonica | 59 | 49.15% | 50.85% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 56.41% | 43.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216276249 | T->C | LOC_Os12g27650(LOC_Os12g27650.1) | INTRON |