Detailed information of SNP:
|
SNP ID:
sf1216276254(Gbrowse)
Chromosome: chr12 Position: 16276254 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1333 | 67.29% | 32.71% |
| All Indica | 723 | 43.57% | 56.43% |
| All Japonica | 491 | 98.78% | 1.22% |
| Aus | 63 | 85.71% | 14.29% |
| Indica I | 324 | 41.98% | 58.02% |
| Indica II | 196 | 43.37% | 56.63% |
| Indica Intermediate | 203 | 46.31% | 53.69% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 96.63% | 3.37% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216276254 | A->G | LOC_Os12g27650(LOC_Os12g27650.1) | INTRON |