Detailed information of SNP:
|
SNP ID:
sf1216276834(Gbrowse)
Chromosome: chr12 Position: 16276834 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1408 | 59.94% | 40.06% |
| All Indica | 796 | 89.45% | 10.55% |
| All Japonica | 496 | 15.73% | 84.27% |
| Aus | 61 | 50.82% | 49.18% |
| Indica I | 373 | 98.66% | 1.34% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216276834 | G->T | LOC_Os12g27650(LOC_Os12g27650.1) | Non-Synonymous SNP |