Detailed information of SNP:
|
SNP ID:
sf1216276837(Gbrowse)
Chromosome: chr12 Position: 16276837 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 59.70% | 40.30% |
| All Indica | 796 | 89.20% | 10.80% |
| All Japonica | 496 | 15.52% | 84.48% |
| Aus | 61 | 49.18% | 50.82% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 75.59% | 24.41% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216276837 | T->C | LOC_Os12g27650(LOC_Os12g27650.1) | Non-Synonymous SNP |