Detailed information of SNP:
|
SNP ID:
sf1216277257(Gbrowse)
Chromosome: chr12 Position: 16277257 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 60.62% | 39.38% |
| All Indica | 797 | 90.21% | 9.79% |
| All Japonica | 497 | 16.30% | 83.70% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216277257 | C->T | INTERGENIC | None |