Detailed information of SNP:
|
SNP ID:
sf1216277733(Gbrowse)
Chromosome: chr12 Position: 16277733 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 60.49% | 39.51% |
| All Indica | 797 | 89.96% | 10.04% |
| All Japonica | 496 | 16.13% | 83.87% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216277733 | C->T | INTERGENIC | None |