Detailed information of SNP:
|
SNP ID:
sf1216279556(Gbrowse)
Chromosome: chr12 Position: 16279556 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 62.68% | 37.32% |
| All Indica | 794 | 95.21% | 4.79% |
| All Japonica | 496 | 15.52% | 84.48% |
| Aus | 66 | 42.42% | 57.58% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 67.74% | 32.26% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216279556 | C->A | INTERGENIC | None |