Detailed information of SNP:
|
SNP ID:
sf1216279615(Gbrowse)
Chromosome: chr12 Position: 16279615 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 59.58% | 40.42% |
| All Indica | 793 | 89.66% | 10.34% |
| All Japonica | 486 | 14.20% | 85.80% |
| Aus | 54 | 42.59% | 57.41% |
| Indica I | 373 | 98.93% | 1.07% |
| Indica II | 212 | 76.89% | 23.11% |
| Indica Intermediate | 208 | 86.06% | 13.94% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 83 | 66.27% | 33.73% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216279615 | C->T | INTERGENIC | None |