Detailed information of SNP:
|
SNP ID:
sf1216279620(Gbrowse)
Chromosome: chr12 Position: 16279620 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 57.43% | 42.57% |
| All Indica | 784 | 85.84% | 14.16% |
| All Japonica | 496 | 15.73% | 84.27% |
| Aus | 65 | 50.77% | 49.23% |
| Indica I | 367 | 94.82% | 5.18% |
| Indica II | 211 | 75.83% | 24.17% |
| Indica Intermediate | 206 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 93 | 68.82% | 31.18% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216279620 | T->C | INTERGENIC | None |