Detailed information of SNP:
|
SNP ID:
sf1216279741(Gbrowse)
Chromosome: chr12 Position: 16279741 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 62.28% | 37.72% |
| All Indica | 794 | 94.96% | 5.04% |
| All Japonica | 494 | 15.38% | 84.62% |
| Aus | 64 | 39.06% | 60.94% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 210 | 87.14% | 12.86% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 68.48% | 31.52% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216279741 | T->A | INTERGENIC | None |