Detailed information of SNP:
|
SNP ID:
sf1216279747(Gbrowse)
Chromosome: chr12 Position: 16279747 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 53.05% | 46.95% |
| All Indica | 794 | 86.65% | 13.35% |
| All Japonica | 495 | 6.06% | 93.94% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 90.67% | 9.33% |
| Indica II | 209 | 82.78% | 17.22% |
| Indica Intermediate | 210 | 83.33% | 16.67% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216279747 | C->T | INTERGENIC | None |