Detailed information of SNP:
|
SNP ID:
sf1216279871(Gbrowse)
Chromosome: chr12 Position: 16279871 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 61.77% | 38.23% |
| All Indica | 797 | 94.35% | 5.65% |
| All Japonica | 496 | 15.32% | 84.68% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 373 | 98.12% | 1.88% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 93 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216279871 | T->C | INTERGENIC | None |