Detailed information of SNP:
|
SNP ID:
sf1216280047(Gbrowse)
Chromosome: chr12 Position: 16280047 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 50.92% | 49.08% |
| All Indica | 796 | 19.72% | 80.28% |
| All Japonica | 497 | 94.97% | 5.03% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 373 | 15.28% | 84.72% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 210 | 22.38% | 77.62% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216280047 | G->T | INTERGENIC | None |