Detailed information of SNP:
|
SNP ID:
sf1216280269(Gbrowse)
Chromosome: chr12 Position: 16280269 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 61.80% | 38.20% |
| All Indica | 795 | 94.59% | 5.41% |
| All Japonica | 497 | 14.89% | 85.11% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 52.63% | 47.37% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216280269 | A->T | INTERGENIC | None |