Detailed information of SNP:
|
SNP ID:
sf1216280389(Gbrowse)
Chromosome: chr12 Position: 16280389 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1204 | 74.17% | 25.83% |
| All Indica | 588 | 62.41% | 37.59% |
| All Japonica | 497 | 89.34% | 10.66% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 240 | 60.42% | 39.58% |
| Indica II | 181 | 56.91% | 43.09% |
| Indica Intermediate | 167 | 71.26% | 28.74% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216280389 | A->G | INTERGENIC | None |