Detailed information of SNP:
|
SNP ID:
sf1216281360(Gbrowse)
Chromosome: chr12 Position: 16281360 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 62.12% | 37.88% |
| All Indica | 790 | 38.10% | 61.90% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 368 | 27.72% | 72.28% |
| Indica II | 212 | 44.34% | 55.66% |
| Indica Intermediate | 210 | 50.00% | 50.00% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216281360 | G->A | INTERGENIC | None |