Detailed information of SNP:
|
SNP ID:
sf1216288633(Gbrowse)
Chromosome: chr12 Position: 16288633 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 62.31% | 37.69% |
| All Indica | 788 | 90.61% | 9.39% |
| All Japonica | 495 | 21.01% | 78.99% |
| Aus | 63 | 49.21% | 50.79% |
| Indica I | 372 | 90.86% | 9.14% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 206 | 85.92% | 14.08% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 93 | 87.10% | 12.90% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216288633 | A->G | INTERGENIC | None |