Detailed information of SNP:
|
SNP ID:
sf1216300419(Gbrowse)
Chromosome: chr12 Position: 16300419 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 65.42% | 34.58% |
| All Indica | 799 | 91.36% | 8.64% |
| All Japonica | 496 | 22.38% | 77.62% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 334 | 2.40% | 97.60% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216300419 | C->T | INTERGENIC | None |