Detailed information of SNP:
|
SNP ID:
sf1216306848(Gbrowse)
Chromosome: chr12 Position: 16306848 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 92.58% | 7.42% |
| All Indica | 798 | 98.50% | 1.50% |
| All Japonica | 496 | 90.52% | 9.48% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216306848 | G->A | INTERGENIC | None |