Detailed information of SNP:
|
SNP ID:
sf1216312395(Gbrowse)
Chromosome: chr12 Position: 16312395 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 66.20% | 33.80% |
| All Indica | 799 | 91.24% | 8.76% |
| All Japonica | 496 | 30.85% | 69.15% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 11.94% | 88.06% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216312395 | T->C | INTERGENIC | None |