Detailed information of SNP:
|
SNP ID:
sf1216317901(Gbrowse)
Chromosome: chr12 Position: 16317901 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 67.44% | 32.56% |
| All Indica | 797 | 58.34% | 41.66% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 375 | 77.07% | 22.93% |
| Indica II | 212 | 31.60% | 68.40% |
| Indica Intermediate | 210 | 51.90% | 48.10% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216317901 | G->T | INTERGENIC | None |