Detailed information of SNP:



SNP ID: sf1216318606(Gbrowse)

Chromosome: chr12

Position: 16318606
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 97.46% 2.54%
All Indica799 98.75% 1.25%
All Japonica496 95.16% 4.84%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 95.77% 4.23%
Indica Intermediate211 99.53% 0.47%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica93 76.34% 23.66%
Japonica Intermediate68 97.06% 2.94%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1216318606 C->T INTERGENIC None