Detailed information of SNP:
|
SNP ID:
sf1216341684(Gbrowse)
Chromosome: chr12 Position: 16341684 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 74.88% | 25.12% |
| All Indica | 797 | 64.49% | 35.51% |
| All Japonica | 497 | 87.93% | 12.07% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 77.01% | 22.99% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 210 | 54.29% | 45.71% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 59.57% | 40.43% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216341684 | T->C | INTERGENIC | None |