Detailed information of SNP:
|
SNP ID:
sf1216341961(Gbrowse)
Chromosome: chr12 Position: 16341961 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 75.42% | 24.58% |
| All Indica | 796 | 66.33% | 33.67% |
| All Japonica | 497 | 86.52% | 13.48% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 77.54% | 22.46% |
| Indica II | 213 | 53.99% | 46.01% |
| Indica Intermediate | 209 | 58.85% | 41.15% |
| Temperate Japonica | 335 | 90.75% | 9.25% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216341961 | G->T | INTERGENIC | None |