Detailed information of SNP:
|
SNP ID:
sf1216343112(Gbrowse)
Chromosome: chr12 Position: 16343112 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 58.69% | 41.31% |
| All Indica | 797 | 44.04% | 55.96% |
| All Japonica | 497 | 76.26% | 23.74% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 24.53% | 75.47% |
| Indica II | 213 | 69.48% | 30.52% |
| Indica Intermediate | 209 | 53.11% | 46.89% |
| Temperate Japonica | 335 | 89.85% | 10.15% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216343112 | G->A | INTERGENIC | None |