Detailed information of SNP:
|
SNP ID:
sf1216343170(Gbrowse)
Chromosome: chr12 Position: 16343170 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 87.60% | 12.40% |
| All Indica | 799 | 92.99% | 7.01% |
| All Japonica | 497 | 88.73% | 11.27% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 60.64% | 39.36% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216343170 | T->C | INTERGENIC | None |