Detailed information of SNP:
|
SNP ID:
sf1216345961(Gbrowse)
Chromosome: chr12 Position: 16345961 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 68.76% | 31.24% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 22.13% | 77.87% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216345961 | A->G | LOC_Os12g27720(LOC_Os12g27720.1) | Non-Synonymous SNP |