Detailed information of SNP:
|
SNP ID:
sf1216350246(Gbrowse)
Chromosome: chr12 Position: 16350246 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1235 | 68.83% | 31.17% |
| All Indica | 763 | 96.33% | 3.67% |
| All Japonica | 406 | 19.70% | 80.30% |
| Aus | 20 | 50.00% | 50.00% |
| Indica I | 359 | 98.33% | 1.67% |
| Indica II | 202 | 98.02% | 1.98% |
| Indica Intermediate | 202 | 91.09% | 8.91% |
| Temperate Japonica | 295 | 6.44% | 93.56% |
| Tropical Japonica | 52 | 73.08% | 26.92% |
| Japonica Intermediate | 59 | 38.98% | 61.02% |
| Group VI/Aromatic | 13 | 23.08% | 76.92% |
| Intermediate | 33 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216350246 | A->G | LOC_Os12g27730(LOC_Os12g27730.1) | Non-Synonymous SNP |