Detailed information of SNP:
|
SNP ID:
sf1216354392(Gbrowse)
Chromosome: chr12 Position: 16354392 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1372 | 93.95% | 6.05% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 495 | 88.69% | 11.31% |
| Aus | 25 | 92.00% | 8.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 92 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216354392 | A->C | INTERGENIC | None |