Detailed information of SNP:
|
SNP ID:
sf1216355432(Gbrowse)
Chromosome: chr12 Position: 16355432 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.04% | 44.96% |
| All Indica | 799 | 27.28% | 72.72% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 17.87% | 82.13% |
| Indica II | 213 | 40.38% | 59.62% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 76.60% | 23.40% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216355432 | G->C | INTERGENIC | None |