Detailed information of SNP:
|
SNP ID:
sf1216356923(Gbrowse)
Chromosome: chr12 Position: 16356923 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1254 | 59.01% | 40.99% |
| All Indica | 637 | 94.82% | 5.18% |
| All Japonica | 495 | 21.62% | 78.38% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 313 | 98.72% | 1.28% |
| Indica II | 148 | 95.27% | 4.73% |
| Indica Intermediate | 176 | 87.50% | 12.50% |
| Temperate Japonica | 333 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216356923 | T->C | INTERGENIC | None |