Detailed information of SNP:
|
SNP ID:
sf1216361392(Gbrowse)
Chromosome: chr12 Position: 16361392 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 52.33% | 47.67% |
| All Indica | 795 | 29.43% | 70.57% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 374 | 22.99% | 77.01% |
| Indica II | 212 | 37.74% | 62.26% |
| Indica Intermediate | 209 | 32.54% | 67.46% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 29.79% | 70.21% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1216361392 | T->G | INTERGENIC | None |